J4_7JSS_007

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7JSS_007 not in the Motif Atlas

Homologous match to J4_4WF9_007

Geometric discrepancy: 0.087

The information below is about J4_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7JSS|1|1|A|1772
7JSS|1|1|A|1773
7JSS|1|1|C|1774
7JSS|1|1|U|1775
7JSS|1|1|G|1776
*
7JSS|1|1|C|1788
7JSS|1|1|A|1789
7JSS|1|1|C|1790
7JSS|1|1|A|1791
7JSS|1|1|G|1792
*
7JSS|1|1|U|1827
7JSS|1|1|G|1828
7JSS|1|1|A|1829
7JSS|1|1|C|1830
*
7JSS|1|1|G|1975
7JSS|1|1|U|1976
7JSS|1|1|A|1977
7JSS|1|1|A|1978
7JSS|1|1|U|1979

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2