J4_7JSW_006

3D structure

PDB id

7JSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GG*UU*ACGAG*UGAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7JSW_006 not in the Motif Atlas

Homologous match to J4_7A0S_007

Geometric discrepancy: 0.2949

The information below is about J4_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_91813.1

Basepair signature

cWW-cWW-F-tSH-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

7JSW|1|1|G|1444
7JSW|1|1|G|1445
*
7JSW|1|1|U|1466
7JSW|1|1|U|1467
*
7JSW|1|1|A|1525
7JSW|1|1|C|1526
7JSW|1|1|G|1527
7JSW|1|1|A|1528
7JSW|1|1|G|1529
*
7JSW|1|1|U|1542
7JSW|1|1|G|1543
7JSW|1|1|A|1544
7JSW|1|1|A|1545
7JSW|1|1|G|1546
7JSW|1|1|C|1547

Current chains

Chain 1

23S ribosomal RNA

Nearby chains