J4_7JSZ_001

3D structure

PDB id

7JSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7JSZ|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7JSZ_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1678

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7JSZ|1|1|C|268
7JSZ|1|1|C|269
*
7JSZ|1|1|G|370
7JSZ|1|1|A|371
7JSZ|1|1|G|372
7JSZ|1|1|U|373
7JSZ|1|1|A|374
7JSZ|1|1|G|375
*
7JSZ|1|1|U|399
7JSZ|1|1|G|400
7JSZ|1|1|A|401
7JSZ|1|1|A|402
7JSZ|1|1|U|403
7JSZ|1|1|A|404
7JSZ|1|1|U|405
7JSZ|1|1|G|406
*
7JSZ|1|1|C|421
7JSZ|1|1|A|422
7JSZ|1|1|A|423
7JSZ|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28