J4_7JSZ_007

3D structure

PDB id

7JSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7JSZ_007 not in the Motif Atlas

Homologous match to J4_4WF9_007

Geometric discrepancy: 0.0888

The information below is about J4_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7JSZ|1|1|A|1772
7JSZ|1|1|A|1773
7JSZ|1|1|C|1774
7JSZ|1|1|U|1775
7JSZ|1|1|G|1776
*
7JSZ|1|1|C|1788
7JSZ|1|1|A|1789
7JSZ|1|1|C|1790
7JSZ|1|1|A|1791
7JSZ|1|1|G|1792
*
7JSZ|1|1|U|1827
7JSZ|1|1|G|1828
7JSZ|1|1|A|1829
7JSZ|1|1|C|1830
*
7JSZ|1|1|G|1975
7JSZ|1|1|U|1976
7JSZ|1|1|A|1977
7JSZ|1|1|A|1978
7JSZ|1|1|U|1979

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2