J4_7JSZ_012

3D structure

PDB id

7JSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7JSZ|1|3|C|183

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7JSZ_012 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.277

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7JSZ|1|3|G|142
7JSZ|1|3|A|143
7JSZ|1|3|G|144
*
7JSZ|1|3|C|178
7JSZ|1|3|A|179
7JSZ|1|3|U|180
7JSZ|1|3|A|181
7JSZ|1|3|A|182
7JSZ|1|3|C|183
7JSZ|1|3|G|184
*
7JSZ|1|3|C|193
7JSZ|1|3|C|194
7JSZ|1|3|A|195
7JSZ|1|3|A|196
7JSZ|1|3|A|197
7JSZ|1|3|G|198
*
7JSZ|1|3|U|219
7JSZ|1|3|G|220
7JSZ|1|3|C|221

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain Y

30S ribosomal protein S20