J4_7JT1_012
3D structure
- PDB id
- 7JT1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GAG*CAUAACG*CCAAAG*UGC
- Length
- 19 nucleotides
- Bulged bases
- 7JT1|1|3|C|183, 7JT1|1|3|A|197
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7JT1_012 not in the Motif Atlas
- Homologous match to J4_5J7L_002
- Geometric discrepancy: 0.2615
- The information below is about J4_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_01665.1
- Basepair signature
- cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
7JT1|1|3|G|142
7JT1|1|3|A|143
7JT1|1|3|G|144
*
7JT1|1|3|C|178
7JT1|1|3|A|179
7JT1|1|3|U|180
7JT1|1|3|A|181
7JT1|1|3|A|182
7JT1|1|3|C|183
7JT1|1|3|G|184
*
7JT1|1|3|C|193
7JT1|1|3|C|194
7JT1|1|3|A|195
7JT1|1|3|A|196
7JT1|1|3|A|197
7JT1|1|3|G|198
*
7JT1|1|3|U|219
7JT1|1|3|G|220
7JT1|1|3|C|221
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain Y
- 30S ribosomal protein S20
Coloring options: