J4_7JT2_001

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7JT2|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7JT2_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1746

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7JT2|1|1|C|268
7JT2|1|1|C|269
*
7JT2|1|1|G|370
7JT2|1|1|A|371
7JT2|1|1|G|372
7JT2|1|1|U|373
7JT2|1|1|A|374
7JT2|1|1|G|375
*
7JT2|1|1|U|399
7JT2|1|1|G|400
7JT2|1|1|A|401
7JT2|1|1|A|402
7JT2|1|1|U|403
7JT2|1|1|A|404
7JT2|1|1|U|405
7JT2|1|1|G|406
*
7JT2|1|1|C|421
7JT2|1|1|A|422
7JT2|1|1|A|423
7JT2|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28