J4_7JT2_003
3D structure
- PDB id
- 7JT2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome stalled on long mRNA with ArfB bound in the A site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAUAAA*UC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 7JT2|1|1|G|1271, 7JT2|1|1|A|1272, 7JT2|1|1|U|1273, 7JT2|1|1|A|1275, 7JT2|1|1|U|1647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7JT2_003 not in the Motif Atlas
- Homologous match to J4_5J7L_021
- Geometric discrepancy: 0.1286
- The information below is about J4_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
7JT2|1|1|C|1270
7JT2|1|1|G|1271
7JT2|1|1|A|1272
7JT2|1|1|U|1273
7JT2|1|1|A|1274
7JT2|1|1|A|1275
7JT2|1|1|A|1276
*
7JT2|1|1|U|1294
7JT2|1|1|C|1295
*
7JT2|1|1|G|1645
7JT2|1|1|C|1646
7JT2|1|1|U|1647
7JT2|1|1|U|1648
*
7JT2|1|1|A|2009
7JT2|1|1|G|2010
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L32
- Chain n
- 50S ribosomal protein L17
- Chain s
- 50S ribosomal protein L22
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