J4_7JT2_012

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7JT2|1|3|C|183, 7JT2|1|3|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7JT2_012 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.2769

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7JT2|1|3|G|142
7JT2|1|3|A|143
7JT2|1|3|G|144
*
7JT2|1|3|C|178
7JT2|1|3|A|179
7JT2|1|3|U|180
7JT2|1|3|A|181
7JT2|1|3|A|182
7JT2|1|3|C|183
7JT2|1|3|G|184
*
7JT2|1|3|C|193
7JT2|1|3|C|194
7JT2|1|3|A|195
7JT2|1|3|A|196
7JT2|1|3|A|197
7JT2|1|3|G|198
*
7JT2|1|3|U|219
7JT2|1|3|G|220
7JT2|1|3|C|221

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain Y

30S ribosomal protein S20