J4_7JT3_008

3D structure

PDB id

7JT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7JT3|1|1|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7JT3_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.14

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7JT3|1|1|C|1833
7JT3|1|1|U|1834
7JT3|1|1|G|1835
*
7JT3|1|1|C|1905
7JT3|1|1|G|1906
*
7JT3|1|1|C|1924
7JT3|1|1|C|1925
7JT3|1|1|U|1926
7JT3|1|1|A|1927
7JT3|1|1|A|1928
7JT3|1|1|G|1929
7JT3|1|1|G|1930
7JT3|1|1|U|1931
7JT3|1|1|A|1932
7JT3|1|1|G|1933
*
7JT3|1|1|C|1967
7JT3|1|1|G|1968
7JT3|1|1|A|1969
7JT3|1|1|A|1970
7JT3|1|1|U|1971
7JT3|1|1|G|1972

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2