J4_7K00_001

3D structure

PDB id

7K00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome at 2 Angstrom Resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7K00|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7K00_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1026

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7K00|1|A|G|115
7K00|1|A|A|116
7K00|1|A|G|117
7K00|1|A|U|118
7K00|1|A|A|119
7K00|1|A|A|120
7K00|1|A|U|121
7K00|1|A|G|122
*
7K00|1|A|U|239
7K00|1|A|G|240
*
7K00|1|A|C|286
7K00|1|A|U|287
7K00|1|A|A|288
7K00|1|A|G|289
*
7K00|1|A|C|311
7K00|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17