J4_7K00_002

3D structure

PDB id

7K00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome at 2 Angstrom Resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7K00|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7K00_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0917

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7K00|1|A|G|142
7K00|1|A|A|143
7K00|1|A|G|144
*
7K00|1|A|C|178
7K00|1|A|A|179
7K00|1|A|U|180
7K00|1|A|A|181
7K00|1|A|A|182
7K00|1|A|C|183
7K00|1|A|G|184
*
7K00|1|A|C|193
7K00|1|A|C|194
7K00|1|A|A|195
7K00|1|A|A|196
7K00|1|A|A|197
7K00|1|A|G|198
*
7K00|1|A|U|219
7K00|1|A|G|220
7K00|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20