3D structure

PDB id
7K00 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Bacterial Ribosome at 2 Angstrom Resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
1.98 Å

Loop

Sequence
UUAG*CAC*GGGGUCG*CA
Length
16 nucleotides
Bulged bases
7K00|1|Y|U|8, 7K00|1|Y|U|47, 7K00|1|Y|C|48
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7K00_004 not in the Motif Atlas
Homologous match to J4_4TUE_004
Geometric discrepancy: 0.3092
The information below is about J4_4TUE_004
Detailed Annotation
tRNA junction
Broad Annotation
No text annotation
Motif group
J4_70449.27
Basepair signature
cWW-F-cWW-cWW-cHS-F-cWW-cWW
Number of instances in this motif group
53

Unit IDs

7K00|1|Y|U|7
7K00|1|Y|U|8
7K00|1|Y|A|9
7K00|1|Y|G|10
*
7K00|1|Y|C|25
7K00|1|Y|A|26
7K00|1|Y|C|27
*
7K00|1|Y|G|43
7K00|1|Y|G|44
7K00|1|Y|G|45
7K00|1|Y|G|46
7K00|1|Y|U|47
7K00|1|Y|C|48
7K00|1|Y|G|49
*
7K00|1|Y|C|65
7K00|1|Y|A|66

Current chains

Chain Y
A-site tRNA-val

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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