J4_7K00_004
3D structure
- PDB id
- 7K00 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome at 2 Angstrom Resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.98 Å
Loop
- Sequence
- UUAG*CAC*GGGGUCG*CA
- Length
- 16 nucleotides
- Bulged bases
- 7K00|1|Y|U|8, 7K00|1|Y|U|47, 7K00|1|Y|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7K00_004 not in the Motif Atlas
- Homologous match to J4_4TUE_004
- Geometric discrepancy: 0.3092
- The information below is about J4_4TUE_004
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.27
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 53
Unit IDs
7K00|1|Y|U|7
7K00|1|Y|U|8
7K00|1|Y|A|9
7K00|1|Y|G|10
*
7K00|1|Y|C|25
7K00|1|Y|A|26
7K00|1|Y|C|27
*
7K00|1|Y|G|43
7K00|1|Y|G|44
7K00|1|Y|G|45
7K00|1|Y|G|46
7K00|1|Y|U|47
7K00|1|Y|C|48
7K00|1|Y|G|49
*
7K00|1|Y|C|65
7K00|1|Y|A|66
Current chains
- Chain Y
- A-site tRNA-val
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: