J4_7K52_001

3D structure

PDB id

7K52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7K52|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7K52_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1293

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7K52|1|1|C|268
7K52|1|1|C|269
*
7K52|1|1|G|370
7K52|1|1|A|371
7K52|1|1|G|372
7K52|1|1|U|373
7K52|1|1|A|374
7K52|1|1|G|375
*
7K52|1|1|U|399
7K52|1|1|G|400
7K52|1|1|A|401
7K52|1|1|A|402
7K52|1|1|U|403
7K52|1|1|A|404
7K52|1|1|U|405
7K52|1|1|G|406
*
7K52|1|1|C|421
7K52|1|1|A|422
7K52|1|1|A|423
7K52|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28