3D structure

PDB id
7K54 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CC*GAGUAG*UGAAUAUG*CAAG
Length
20 nucleotides
Bulged bases
7K54|1|1|U|405
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7K54_001 not in the Motif Atlas
Homologous match to J4_5J7L_018
Geometric discrepancy: 0.1398
The information below is about J4_5J7L_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

7K54|1|1|C|268
7K54|1|1|C|269
*
7K54|1|1|G|370
7K54|1|1|A|371
7K54|1|1|G|372
7K54|1|1|U|373
7K54|1|1|A|374
7K54|1|1|G|375
*
7K54|1|1|U|399
7K54|1|1|G|400
7K54|1|1|A|401
7K54|1|1|A|402
7K54|1|1|U|403
7K54|1|1|A|404
7K54|1|1|U|405
7K54|1|1|G|406
*
7K54|1|1|C|421
7K54|1|1|A|422
7K54|1|1|A|423
7K54|1|1|G|424

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain g
50S ribosomal protein L9
Chain x
50S ribosomal protein L28

Coloring options:


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