J4_7K54_015
3D structure
- PDB id
- 7K54 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGG*CGUC*GAAGGUCG*CC
- Length
- 18 nucleotides
- Bulged bases
- 7K54|1|6|U|8, 7K54|1|6|U|47, 7K54|1|6|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7K54_015 not in the Motif Atlas
- Homologous match to J4_1QF6_001
- Geometric discrepancy: 0.379
- The information below is about J4_1QF6_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_94519.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7K54|1|6|G|7
7K54|1|6|U|8
7K54|1|6|G|9
7K54|1|6|G|10
*
7K54|1|6|C|25
7K54|1|6|G|26
7K54|1|6|U|27
7K54|1|6|C|28
*
7K54|1|6|G|42
7K54|1|6|A|43
7K54|1|6|A|44
7K54|1|6|G|45
7K54|1|6|G|46
7K54|1|6|U|47
7K54|1|6|C|48
7K54|1|6|G|49
*
7K54|1|6|C|65
7K54|1|6|C|66
Current chains
- Chain 6
- tRNAfMet
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain 5
- Transfer RNA; tRNA
- Chain C
- 50S ribosomal protein L33
- Chain R
- 30S ribosomal protein S13
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