J4_7K55_001

3D structure

PDB id

7K55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Near post-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure III-FS)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7K55|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7K55_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1453

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7K55|1|1|C|268
7K55|1|1|C|269
*
7K55|1|1|G|370
7K55|1|1|A|371
7K55|1|1|G|372
7K55|1|1|U|373
7K55|1|1|A|374
7K55|1|1|G|375
*
7K55|1|1|U|399
7K55|1|1|G|400
7K55|1|1|A|401
7K55|1|1|A|402
7K55|1|1|U|403
7K55|1|1|A|404
7K55|1|1|U|405
7K55|1|1|G|406
*
7K55|1|1|C|421
7K55|1|1|A|422
7K55|1|1|A|423
7K55|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28