J4_7KGB_013
3D structure
- PDB id
- 7KGB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 7KGB|1|y|U|8, 7KGB|1|y|U|48, 7KGB|1|y|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7KGB_013 not in the Motif Atlas
- Homologous match to J4_4TUE_004
- Geometric discrepancy: 0.1851
- The information below is about J4_4TUE_004
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.27
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 53
Unit IDs
7KGB|1|y|G|7
7KGB|1|y|U|8
7KGB|1|y|G|9
7KGB|1|y|G|10
*
7KGB|1|y|C|26
7KGB|1|y|G|27
7KGB|1|y|U|28
*
7KGB|1|y|A|44
7KGB|1|y|A|45
7KGB|1|y|G|46
7KGB|1|y|G|47
7KGB|1|y|U|48
7KGB|1|y|C|49
7KGB|1|y|G|50
*
7KGB|1|y|C|66
7KGB|1|y|C|67
Current chains
- Chain y
- tRNA-initiator Met(CAU)
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain m
- 30S ribosomal protein S13
Coloring options: