J4_7KWG_002

3D structure

PDB id

7KWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GAC*GAUAAUAU*AGUGAAAG*CAC

Length

22 nucleotides

Bulged bases

7KWG|1|a|U|183, 7KWG|1|a|A|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7KWG|1|a|G|142
7KWG|1|a|A|143
7KWG|1|a|C|144
*
7KWG|1|a|G|178
7KWG|1|a|A|179
7KWG|1|a|U|180
7KWG|1|a|A|181
7KWG|1|a|A|182
7KWG|1|a|U|183
7KWG|1|a|A|184
7KWG|1|a|U|185
*
7KWG|1|a|A|206
7KWG|1|a|G|207
7KWG|1|a|U|208
7KWG|1|a|G|209
7KWG|1|a|A|210
7KWG|1|a|A|211
7KWG|1|a|A|212
7KWG|1|a|G|213
*
7KWG|1|a|C|227
7KWG|1|a|A|228
7KWG|1|a|C|229

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20