J4_7LH5_002

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

GAG*CAUGUGG*CCAAAG*CGC

Length

19 nucleotides

Bulged bases

7LH5|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7LH5_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.5373

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7LH5|1|AA|G|142
7LH5|1|AA|A|143
7LH5|1|AA|G|144
*
7LH5|1|AA|C|178
7LH5|1|AA|A|179
7LH5|1|AA|U|180
7LH5|1|AA|G|181
7LH5|1|AA|U|182
7LH5|1|AA|G|183
7LH5|1|AA|G|184
*
7LH5|1|AA|C|193
7LH5|1|AA|C|194
7LH5|1|AA|A|195
7LH5|1|AA|A|196
7LH5|1|AA|A|197
7LH5|1|AA|G|198
*
7LH5|1|AA|C|219
7LH5|1|AA|G|220
7LH5|1|AA|C|221

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20