J4_7LH5_005

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

7LH5|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7LH5_005 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1582

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

7LH5|1|BA|C|268
7LH5|1|BA|U|269
*
7LH5|1|BA|G|370
7LH5|1|BA|A|371
7LH5|1|BA|G|372
7LH5|1|BA|U|373
7LH5|1|BA|A|374
7LH5|1|BA|C|375
*
7LH5|1|BA|G|399
7LH5|1|BA|G|400
7LH5|1|BA|A|401
7LH5|1|BA|A|402
7LH5|1|BA|U|403
7LH5|1|BA|C|404
7LH5|1|BA|U|405
7LH5|1|BA|G|406
*
7LH5|1|BA|U|421
7LH5|1|BA|A|422
7LH5|1|BA|A|423
7LH5|1|BA|G|424

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain BI

50S ribosomal protein L9