J4_7LH5_016

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

7LH5|1|CA|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7LH5_016 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.1011

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7LH5|1|CA|G|115
7LH5|1|CA|A|116
7LH5|1|CA|G|117
7LH5|1|CA|U|118
7LH5|1|CA|A|119
7LH5|1|CA|A|120
7LH5|1|CA|C|121
7LH5|1|CA|G|122
*
7LH5|1|CA|U|239
7LH5|1|CA|C|240
*
7LH5|1|CA|G|286
7LH5|1|CA|U|287
7LH5|1|CA|A|288
7LH5|1|CA|G|289
*
7LH5|1|CA|C|311
7LH5|1|CA|C|312

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CP

30S ribosomal protein S16

Chain CQ

30S ribosomal protein S17