J4_7LH5_019
3D structure
- PDB id
- 7LH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.27 Å
Loop
- Sequence
- GUGG*CGU*AAGAUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 7LH5|1|CV|U|8, 7LH5|1|CV|U|47, 7LH5|1|CV|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7LH5_019 not in the Motif Atlas
- Homologous match to J4_4V9Q_031
- Geometric discrepancy: 0.1648
- The information below is about J4_4V9Q_031
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
7LH5|1|CV|G|7
7LH5|1|CV|U|8
7LH5|1|CV|G|9
7LH5|1|CV|G|10
*
7LH5|1|CV|C|25
7LH5|1|CV|G|26
7LH5|1|CV|U|27
*
7LH5|1|CV|A|43
7LH5|1|CV|A|44
7LH5|1|CV|G|45
7LH5|1|CV|A|46
7LH5|1|CV|U|47
7LH5|1|CV|C|48
7LH5|1|CV|G|49
*
7LH5|1|CV|C|65
7LH5|1|CV|C|66
Current chains
- Chain CV
- P-site tRNA fMet
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CM
- 30S ribosomal protein S13
- Chain D0
- 50S ribosomal protein L27
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
- Chain DQ
- 50S ribosomal protein L16
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