J4_7LS1_013
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AAG*CGAAAG*CCA(PSU)AAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 7LS1|1|m2|A|674, 7LS1|1|m2|A|1085, 7LS1|1|m2|C|1087, 7LS1|1|m2|G|1088, 7LS1|1|m2|A|1089, 7LS1|1|m2|U|1090
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7LS1_013 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.1627
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7LS1|1|m2|A|673
7LS1|1|m2|A|674
7LS1|1|m2|G|675
*
7LS1|1|m2|C|1034
7LS1|1|m2|G|1035
7LS1|1|m2|A|1036
7LS1|1|m2|A|1037
7LS1|1|m2|A|1038
7LS1|1|m2|G|1039
*
7LS1|1|m2|C|1080
7LS1|1|m2|C|1081
7LS1|1|m2|A|1082
7LS1|1|m2|PSU|1083
7LS1|1|m2|A|1084
7LS1|1|m2|A|1085
7LS1|1|m2|A|1086
7LS1|1|m2|C|1087
7LS1|1|m2|G|1088
7LS1|1|m2|A|1089
7LS1|1|m2|U|1090
7LS1|1|m2|G|1091
*
7LS1|1|m2|U|1162
7LS1|1|m2|U|1163
Current chains
- Chain m2
- 28S rRNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain E3
- 40S ribosomal protein S23
- Chain F3
- 40S ribosomal protein S26
- Chain N3
- 40S ribosomal protein S13
- Chain O3
- 40S ribosomal protein S14
- Chain P3
- 40S ribosomal protein S15a
- Chain h2
- 60S ribosomal protein L41
- Chain j2
- 60S ribosomal protein L37a
- Chain w2
- 40S ribosomal protein S11
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