J4_7LS1_018

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGG*UGC*GAGGUCG*CC

Length

16 nucleotides

Bulged bases

7LS1|1|n2|U|9, 7LS1|1|n2|U|47, 7LS1|1|n2|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7LS1_018 not in the Motif Atlas

Homologous match to J4_3WQY_001

Geometric discrepancy: 0.2834

The information below is about J4_3WQY_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.2

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

49

Unit IDs

7LS1|1|n2|G|8
7LS1|1|n2|U|9
7LS1|1|n2|G|10
7LS1|1|n2|G|11
*
7LS1|1|n2|U|25
7LS1|1|n2|G|26
7LS1|1|n2|C|27
*
7LS1|1|n2|G|43
7LS1|1|n2|A|44
7LS1|1|n2|G|45
7LS1|1|n2|G|46
7LS1|1|n2|U|47
7LS1|1|n2|C|48
7LS1|1|n2|G|49
*
7LS1|1|n2|C|65
7LS1|1|n2|C|66

Current chains

Chain n2

tRNA

Nearby chains

Chain i2

60S ribosomal protein L36a

Chain m2

Small subunit ribosomal RNA; SSU rRNA