J4_7LS2_002

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

7LS2|1|A2|C|216, 7LS2|1|A2|C|217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS2|1|A2|C|196
7LS2|1|A2|A|197
7LS2|1|A2|A|198
7LS2|1|A2|G|199
*
7LS2|1|A2|C|215
7LS2|1|A2|C|216
7LS2|1|A2|C|217
7LS2|1|A2|A|218
7LS2|1|A2|G|219
7LS2|1|A2|C|220
7LS2|1|A2|C|221
7LS2|1|A2|C|222
*
7LS2|1|A2|G|226
7LS2|1|A2|A|227
7LS2|1|A2|C|228
*
7LS2|1|A2|G|240
7LS2|1|A2|G|241
7LS2|1|A2|U|242
7LS2|1|A2|A|243
7LS2|1|A2|G|244

Current chains

Chain A2

28S rRNA

Nearby chains

Chain F2

60S ribosomal protein L4

Chain S2

60S ribosomal protein L26