J4_7LS2_004

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

(OMG)(OMC)AAAUAU*AGG*CAUGUU*AGC

Length

20 nucleotides

Bulged bases

7LS2|1|A2|A|2121, 7LS2|1|A2|U|2124, 7LS2|1|A2|U|2583

QA status

Modified nucleotides: OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS2|1|A2|OMG|2119
7LS2|1|A2|OMC|2120
7LS2|1|A2|A|2121
7LS2|1|A2|A|2122
7LS2|1|A2|A|2123
7LS2|1|A2|U|2124
7LS2|1|A2|A|2125
7LS2|1|A2|U|2126
*
7LS2|1|A2|A|2144
7LS2|1|A2|G|2145
7LS2|1|A2|G|2146
*
7LS2|1|A2|C|2579
7LS2|1|A2|A|2580
7LS2|1|A2|U|2581
7LS2|1|A2|G|2582
7LS2|1|A2|U|2583
7LS2|1|A2|U|2584
*
7LS2|1|A2|A|3512
7LS2|1|A2|G|3513
7LS2|1|A2|C|3514

Current chains

Chain A2

28S rRNA

Nearby chains

Chain J2

60S ribosomal protein L17

Chain L2

60S ribosomal protein L19

Chain X2

60S ribosomal protein L31