J4_7LS2_006

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGAUG*CAGUG*CGACC*GAGGGUGUAAAUC

Length

29 nucleotides

Bulged bases

7LS2|1|A2|U|2309, 7LS2|1|A2|U|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS2|1|A2|G|2305
7LS2|1|A2|A|2306
7LS2|1|A2|G|2307
7LS2|1|A2|A|2308
7LS2|1|A2|U|2309
7LS2|1|A2|G|2310
*
7LS2|1|A2|C|2327
7LS2|1|A2|A|2328
7LS2|1|A2|G|2329
7LS2|1|A2|U|2330
7LS2|1|A2|G|2331
*
7LS2|1|A2|C|2340
7LS2|1|A2|G|2341
7LS2|1|A2|A|2342
7LS2|1|A2|C|2343
7LS2|1|A2|C|2344
*
7LS2|1|A2|G|2511
7LS2|1|A2|A|2512
7LS2|1|A2|G|2513
7LS2|1|A2|G|2514
7LS2|1|A2|G|2515
7LS2|1|A2|U|2516
7LS2|1|A2|G|2517
7LS2|1|A2|U|2518
7LS2|1|A2|A|2519
7LS2|1|A2|A|2520
7LS2|1|A2|A|2521
7LS2|1|A2|U|2522
7LS2|1|A2|C|2523

Current chains

Chain A2

28S rRNA

Nearby chains

Chain T2

60S ribosomal protein L27

Chain a2

60S ribosomal protein L34