J4_7LV0_001

3D structure

PDB id

7LV0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation rotated ribosome +1-frameshifting(CCC-A) complex (Structure Irot-FS)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7LV0|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7LV0_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1575

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7LV0|1|1|C|268
7LV0|1|1|C|269
*
7LV0|1|1|G|370
7LV0|1|1|A|371
7LV0|1|1|G|372
7LV0|1|1|U|373
7LV0|1|1|A|374
7LV0|1|1|G|375
*
7LV0|1|1|U|399
7LV0|1|1|G|400
7LV0|1|1|A|401
7LV0|1|1|A|402
7LV0|1|1|U|403
7LV0|1|1|A|404
7LV0|1|1|U|405
7LV0|1|1|G|406
*
7LV0|1|1|C|421
7LV0|1|1|A|422
7LV0|1|1|A|423
7LV0|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28