J4_7LVK_001

3D structure

PDB id

7LVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified 50S subunit from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7LVK|1|I|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7LVK_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.106

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7LVK|1|I|C|268
7LVK|1|I|C|269
*
7LVK|1|I|G|370
7LVK|1|I|A|371
7LVK|1|I|G|372
7LVK|1|I|U|373
7LVK|1|I|A|374
7LVK|1|I|G|375
*
7LVK|1|I|U|399
7LVK|1|I|G|400
7LVK|1|I|A|401
7LVK|1|I|A|402
7LVK|1|I|U|403
7LVK|1|I|A|404
7LVK|1|I|U|405
7LVK|1|I|G|406
*
7LVK|1|I|C|421
7LVK|1|I|A|422
7LVK|1|I|A|423
7LVK|1|I|G|424

Current chains

Chain I

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L9

Chain f

50S ribosomal protein L28