J4_7LVK_006

3D structure

PDB id

7LVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified 50S subunit from Escherichia coli

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

7LVK|1|I|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7LVK_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0591

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7LVK|1|I|U|1313
7LVK|1|I|C|1314
*
7LVK|1|I|G|1338
7LVK|1|I|G|1339
7LVK|1|I|U|1340
7LVK|1|I|G|1341
7LVK|1|I|A|1342
7LVK|1|I|G|1343
*
7LVK|1|I|C|1404
7LVK|1|I|U|1405
*
7LVK|1|I|A|1597
7LVK|1|I|A|1598
7LVK|1|I|U|1599
7LVK|1|I|C|1600
7LVK|1|I|G|1601
7LVK|1|I|U|1602
7LVK|1|I|A|1603

Current chains

Chain I

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L23