J4_7M4W_001

3D structure

PDB id

7M4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S Empty

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7M4W|1|A|U|404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7M4W_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1172

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7M4W|1|A|C|275
7M4W|1|A|C|276
*
7M4W|1|A|G|369
7M4W|1|A|A|370
7M4W|1|A|G|371
7M4W|1|A|U|372
7M4W|1|A|A|373
7M4W|1|A|G|374
*
7M4W|1|A|U|398
7M4W|1|A|G|399
7M4W|1|A|A|400
7M4W|1|A|A|401
7M4W|1|A|U|402
7M4W|1|A|A|403
7M4W|1|A|U|404
7M4W|1|A|G|405
*
7M4W|1|A|C|420
7M4W|1|A|A|421
7M4W|1|A|A|422
7M4W|1|A|G|423

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain W

50S ribosomal protein L28