J4_7M4W_012

3D structure

PDB id

7M4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S Empty

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GAGUAAUG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

7M4W|1|a|U|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7M4W_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1813

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7M4W|1|a|G|111
7M4W|1|a|A|112
7M4W|1|a|G|113
7M4W|1|a|U|114
7M4W|1|a|A|115
7M4W|1|a|A|116
7M4W|1|a|U|117
7M4W|1|a|G|118
*
7M4W|1|a|U|235
7M4W|1|a|C|236
*
7M4W|1|a|G|282
7M4W|1|a|U|283
7M4W|1|a|A|284
7M4W|1|a|G|285
*
7M4W|1|a|C|307
7M4W|1|a|C|308

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17