J4_7M4Z_002

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

GGAAC*GAAC*GAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7M4Z_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0927

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7M4Z|1|A|G|299
7M4Z|1|A|G|300
7M4Z|1|A|A|301
7M4Z|1|A|A|302
7M4Z|1|A|C|303
*
7M4Z|1|A|G|318
7M4Z|1|A|A|319
7M4Z|1|A|A|320
7M4Z|1|A|C|321
*
7M4Z|1|A|G|325
7M4Z|1|A|A|326
7M4Z|1|A|G|327
*
7M4Z|1|A|C|339
7M4Z|1|A|G|340
7M4Z|1|A|U|341
7M4Z|1|A|A|342
7M4Z|1|A|C|343

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain T

50S ribosomal protein L24