J4_7M4Z_009

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7M4Z|1|A|U|1967

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7M4Z_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1614

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

7M4Z|1|A|C|1829
7M4Z|1|A|U|1830
7M4Z|1|A|G|1831
*
7M4Z|1|A|C|1901
7M4Z|1|A|G|1902
*
7M4Z|1|A|C|1920
7M4Z|1|A|C|1921
7M4Z|1|A|U|1922
7M4Z|1|A|A|1923
7M4Z|1|A|A|1924
7M4Z|1|A|G|1925
7M4Z|1|A|G|1926
7M4Z|1|A|U|1927
7M4Z|1|A|A|1928
7M4Z|1|A|G|1929
*
7M4Z|1|A|C|1963
7M4Z|1|A|G|1964
7M4Z|1|A|A|1965
7M4Z|1|A|A|1966
7M4Z|1|A|U|1967
7M4Z|1|A|G|1968

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA