J4_7M5D_001

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7M5D|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7M5D_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1211

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7M5D|1|1|C|268
7M5D|1|1|C|269
*
7M5D|1|1|G|370
7M5D|1|1|A|371
7M5D|1|1|G|372
7M5D|1|1|U|373
7M5D|1|1|A|374
7M5D|1|1|G|375
*
7M5D|1|1|U|399
7M5D|1|1|G|400
7M5D|1|1|A|401
7M5D|1|1|A|402
7M5D|1|1|U|403
7M5D|1|1|A|404
7M5D|1|1|U|405
7M5D|1|1|G|406
*
7M5D|1|1|C|421
7M5D|1|1|A|422
7M5D|1|1|A|423
7M5D|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L9

Chain X

50S ribosomal protein L28