3D structure

PDB id
7M5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CGAUAAA*UC*GCUU*AG
Length
15 nucleotides
Bulged bases
7M5D|1|1|G|1271, 7M5D|1|1|A|1272, 7M5D|1|1|U|1273, 7M5D|1|1|A|1275, 7M5D|1|1|U|1647
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7M5D_004 not in the Motif Atlas
Homologous match to J4_5J7L_021
Geometric discrepancy: 0.0926
The information below is about J4_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_64571.5
Basepair signature
cWW-F-cWW-tSS-cWW-F-cWW
Number of instances in this motif group
4

Unit IDs

7M5D|1|1|C|1270
7M5D|1|1|G|1271
7M5D|1|1|A|1272
7M5D|1|1|U|1273
7M5D|1|1|A|1274
7M5D|1|1|A|1275
7M5D|1|1|A|1276
*
7M5D|1|1|U|1294
7M5D|1|1|C|1295
*
7M5D|1|1|G|1645
7M5D|1|1|C|1646
7M5D|1|1|U|1647
7M5D|1|1|U|1648
*
7M5D|1|1|A|2009
7M5D|1|1|G|2010

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain N
50S ribosomal protein L17
Chain S
50S ribosomal protein L22
Chain b
50S ribosomal protein L32

Coloring options:


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