3D structure

PDB id
7M5D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GAGUAAUG*UG*CUAG*CC
Length
16 nucleotides
Bulged bases
7M5D|1|2|U|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7M5D_012 not in the Motif Atlas
Homologous match to J4_5J7L_001
Geometric discrepancy: 0.1702
The information below is about J4_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

7M5D|1|2|G|115
7M5D|1|2|A|116
7M5D|1|2|G|117
7M5D|1|2|U|118
7M5D|1|2|A|119
7M5D|1|2|A|120
7M5D|1|2|U|121
7M5D|1|2|G|122
*
7M5D|1|2|U|239
7M5D|1|2|G|240
*
7M5D|1|2|C|286
7M5D|1|2|U|287
7M5D|1|2|A|288
7M5D|1|2|G|289
*
7M5D|1|2|C|311
7M5D|1|2|C|312

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain u
30S ribosomal protein S16
Chain v
30S ribosomal protein S17

Coloring options:


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