J4_7M5D_012

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7M5D|1|2|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7M5D_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1702

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7M5D|1|2|G|115
7M5D|1|2|A|116
7M5D|1|2|G|117
7M5D|1|2|U|118
7M5D|1|2|A|119
7M5D|1|2|A|120
7M5D|1|2|U|121
7M5D|1|2|G|122
*
7M5D|1|2|U|239
7M5D|1|2|G|240
*
7M5D|1|2|C|286
7M5D|1|2|U|287
7M5D|1|2|A|288
7M5D|1|2|G|289
*
7M5D|1|2|C|311
7M5D|1|2|C|312

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain v

30S ribosomal protein S17