J4_7M5D_013

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7M5D|1|2|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7M5D_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1347

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7M5D|1|2|G|142
7M5D|1|2|A|143
7M5D|1|2|G|144
*
7M5D|1|2|C|178
7M5D|1|2|A|179
7M5D|1|2|U|180
7M5D|1|2|A|181
7M5D|1|2|A|182
7M5D|1|2|C|183
7M5D|1|2|G|184
*
7M5D|1|2|C|193
7M5D|1|2|C|194
7M5D|1|2|A|195
7M5D|1|2|A|196
7M5D|1|2|A|197
7M5D|1|2|G|198
*
7M5D|1|2|U|219
7M5D|1|2|G|220
7M5D|1|2|C|221

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20