J4_7MD7_014

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

7MD7|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7MD7_014 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0771

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

7MD7|1|2A|C|268
7MD7|1|2A|U|269
*
7MD7|1|2A|G|370
7MD7|1|2A|A|371
7MD7|1|2A|G|372
7MD7|1|2A|U|373
7MD7|1|2A|A|374
7MD7|1|2A|C|375
*
7MD7|1|2A|G|399
7MD7|1|2A|G|400
7MD7|1|2A|A|401
7MD7|1|2A|A|402
7MD7|1|2A|U|403
7MD7|1|2A|C|404
7MD7|1|2A|U|405
7MD7|1|2A|G|406
*
7MD7|1|2A|U|421
7MD7|1|2A|A|422
7MD7|1|2A|A|423
7MD7|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9