J4_7MD7_017

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

7MD7|1|2A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7MD7_017 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0719

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7MD7|1|2A|G|1310
7MD7|1|2A|G|1311
7MD7|1|2A|U|1312
7MD7|1|2A|U|1313
7MD7|1|2A|C|1314
*
7MD7|1|2A|G|1338
7MD7|1|2A|G|1339
7MD7|1|2A|U|1340
7MD7|1|2A|U|1341
7MD7|1|2A|A|1342
7MD7|1|2A|G|1343
*
7MD7|1|2A|C|1404
7MD7|1|2A|U|1405
*
7MD7|1|2A|A|1597
7MD7|1|2A|C|1598
7MD7|1|2A|C|1599
7MD7|1|2A|C|1600
7MD7|1|2A|G|1601
7MD7|1|2A|U|1602
7MD7|1|2A|A|1603
7MD7|1|2A|C|1604

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23