J4_7MDZ_002
3D structure
- PDB id
- 7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S rabbit ribosome stalled with benzamide-CHX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCG*UAAG
- Length
- 19 nucleotides
- Bulged bases
- 7MDZ|1|5|C|309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7MDZ_002 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1185
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7MDZ|1|5|C|111
7MDZ|1|5|C|112
*
7MDZ|1|5|G|278
7MDZ|1|5|A|279
7MDZ|1|5|G|280
7MDZ|1|5|U|281
7MDZ|1|5|C|282
7MDZ|1|5|G|283
*
7MDZ|1|5|C|304
7MDZ|1|5|A|305
7MDZ|1|5|A|306
7MDZ|1|5|A|307
7MDZ|1|5|G|308
7MDZ|1|5|C|309
7MDZ|1|5|G|310
*
7MDZ|1|5|U|327
7MDZ|1|5|A|328
7MDZ|1|5|A|329
7MDZ|1|5|G|330
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L13
- Chain N
- Ribosomal protein L15
- Chain h
- eL35
- Chain i
- 60S ribosomal protein L36
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