J4_7MDZ_005

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

7MDZ|1|5|A|2366, 7MDZ|1|5|U|2369, 7MDZ|1|5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MDZ|1|5|C|2365
7MDZ|1|5|A|2366
7MDZ|1|5|A|2367
7MDZ|1|5|A|2368
7MDZ|1|5|U|2369
7MDZ|1|5|A|2370
7MDZ|1|5|U|2371
*
7MDZ|1|5|A|2389
7MDZ|1|5|G|2390
7MDZ|1|5|G|2391
*
7MDZ|1|5|C|2824
7MDZ|1|5|A|2825
7MDZ|1|5|U|2826
7MDZ|1|5|G|2827
7MDZ|1|5|U|2828
7MDZ|1|5|U|2829
*
7MDZ|1|5|A|3856
7MDZ|1|5|G|3857

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

uL22

Chain R

Ribosomal protein L19

Chain d

eL31