J4_7MDZ_011
3D structure
- PDB id
- 7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S rabbit ribosome stalled with benzamide-CHX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUAA*UC*GUG*CGCC
- Length
- 13 nucleotides
- Bulged bases
- 7MDZ|1|5|U|4677
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7MDZ_011 not in the Motif Atlas
- Homologous match to J4_8GLP_013
- Geometric discrepancy: 0.0866
- The information below is about J4_8GLP_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69783.1
- Basepair signature
- cWW-F-F-F-F-cWW-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7MDZ|1|5|G|4587
7MDZ|1|5|U|4588
7MDZ|1|5|A|4589
7MDZ|1|5|A|4590
*
7MDZ|1|5|U|4620
7MDZ|1|5|C|4621
*
7MDZ|1|5|G|4676
7MDZ|1|5|U|4677
7MDZ|1|5|G|4678
*
7MDZ|1|5|C|4712
7MDZ|1|5|G|4713
7MDZ|1|5|C|4714
7MDZ|1|5|C|4715
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain O
- uL13
- Chain V
- Ribosomal protein L23
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