J4_7MPI_001

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UC*GAGUCG*CUAAGUGG*CUAAA

Length

21 nucleotides

Bulged bases

7MPI|1|A1|U|298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MPI|1|A1|U|112
7MPI|1|A1|C|113
*
7MPI|1|A1|G|267
7MPI|1|A1|A|268
7MPI|1|A1|G|269
7MPI|1|A1|U|270
7MPI|1|A1|C|271
7MPI|1|A1|G|272
*
7MPI|1|A1|C|293
7MPI|1|A1|U|294
7MPI|1|A1|A|295
7MPI|1|A1|A|296
7MPI|1|A1|G|297
7MPI|1|A1|U|298
7MPI|1|A1|G|299
7MPI|1|A1|G|300
*
7MPI|1|A1|C|315
7MPI|1|A1|U|316
7MPI|1|A1|A|317
7MPI|1|A1|A|318
7MPI|1|A1|A|319

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AL

60S ribosomal protein L13-A

Chain AN

60S ribosomal protein L15-A

Chain Ah

60S ribosomal protein L35-A

Chain Ai

60S ribosomal protein L36-A