J4_7MPI_007

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

7MPI|1|A1|U|2314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7MPI_007 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.162

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7MPI|1|A1|C|2192
7MPI|1|A1|U|2193
7MPI|1|A1|G|2194
*
7MPI|1|A1|C|2248
7MPI|1|A1|G|2249
*
7MPI|1|A1|C|2267
7MPI|1|A1|U|2268
7MPI|1|A1|U|2269
7MPI|1|A1|A|2270
7MPI|1|A1|A|2271
7MPI|1|A1|G|2272
7MPI|1|A1|G|2273
7MPI|1|A1|U|2274
7MPI|1|A1|A|2275
7MPI|1|A1|G|2276
*
7MPI|1|A1|U|2310
7MPI|1|A1|G|2311
7MPI|1|A1|A|2312
7MPI|1|A1|A|2313
7MPI|1|A1|U|2314
7MPI|1|A1|G|2315

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain An

60S ribosomal protein L41-A

Chain B5

Small subunit ribosomal RNA; SSU rRNA