3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
UC*GAGUCG*CUAAGUG*UAAA
Length
19 nucleotides
Bulged bases
7MPJ|1|A1|U|298
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7MPJ_001 not in the Motif Atlas
Homologous match to J4_8P9A_012
Geometric discrepancy: 0.2302
The information below is about J4_8P9A_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

7MPJ|1|A1|U|112
7MPJ|1|A1|C|113
*
7MPJ|1|A1|G|267
7MPJ|1|A1|A|268
7MPJ|1|A1|G|269
7MPJ|1|A1|U|270
7MPJ|1|A1|C|271
7MPJ|1|A1|G|272
*
7MPJ|1|A1|C|293
7MPJ|1|A1|U|294
7MPJ|1|A1|A|295
7MPJ|1|A1|A|296
7MPJ|1|A1|G|297
7MPJ|1|A1|U|298
7MPJ|1|A1|G|299
*
7MPJ|1|A1|U|316
7MPJ|1|A1|A|317
7MPJ|1|A1|A|318
7MPJ|1|A1|A|319

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AL
60S ribosomal protein L13-A
Chain AN
60S ribosomal protein L15-A
Chain Ah
60S ribosomal protein L35-A
Chain Ai
60S ribosomal protein L36-A

Coloring options:


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