J4_7MPJ_002
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUAUG*CGUC*GAG*CGUGUG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7MPJ_002 not in the Motif Atlas
- Homologous match to J4_8P9A_013
- Geometric discrepancy: 0.1004
- The information below is about J4_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_12410.1
- Basepair signature
- cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7MPJ|1|A1|C|185
7MPJ|1|A1|U|186
7MPJ|1|A1|A|187
7MPJ|1|A1|U|188
7MPJ|1|A1|G|189
*
7MPJ|1|A1|C|205
7MPJ|1|A1|G|206
7MPJ|1|A1|U|207
7MPJ|1|A1|C|208
*
7MPJ|1|A1|G|212
7MPJ|1|A1|A|213
7MPJ|1|A1|G|214
*
7MPJ|1|A1|C|226
7MPJ|1|A1|G|227
7MPJ|1|A1|U|228
7MPJ|1|A1|G|229
7MPJ|1|A1|U|230
7MPJ|1|A1|G|231
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AC
- 60S ribosomal protein L4-A
- Chain AY
- 60S ribosomal protein L26-A
Coloring options: