3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GGUUC*GGUUAG*CC*GGUCGUAC
Length
21 nucleotides
Bulged bases
7MPJ|1|A1|U|1523
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7MPJ_004 not in the Motif Atlas
Homologous match to J4_8P9A_015
Geometric discrepancy: 0.053
The information below is about J4_8P9A_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

7MPJ|1|A1|G|1492
7MPJ|1|A1|G|1493
7MPJ|1|A1|U|1494
7MPJ|1|A1|U|1495
7MPJ|1|A1|C|1496
*
7MPJ|1|A1|G|1520
7MPJ|1|A1|G|1521
7MPJ|1|A1|U|1522
7MPJ|1|A1|U|1523
7MPJ|1|A1|A|1524
7MPJ|1|A1|G|1525
*
7MPJ|1|A1|C|1614
7MPJ|1|A1|C|1615
*
7MPJ|1|A1|G|1829
7MPJ|1|A1|G|1830
7MPJ|1|A1|U|1831
7MPJ|1|A1|C|1832
7MPJ|1|A1|G|1833
7MPJ|1|A1|U|1834
7MPJ|1|A1|A|1835
7MPJ|1|A1|C|1836

Current chains

Chain A1
25S rRNA

Nearby chains

Chain A4
5.8S ribosomal RNA; 5.8S rRNA
Chain AR
60S ribosomal protein L19-A
Chain AX
60S ribosomal protein L25
Chain Ag
60S ribosomal protein L34-A
Chain Aj
60S ribosomal protein L37-A
Chain Ak
60S ribosomal protein L38
Chain Al
60S ribosomal protein L39

Coloring options:


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