J4_7MQA_002
3D structure
- PDB id
- 7MQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AAG*CGAAAG*CCA(PSU)AAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 7MQA|1|L1|A|672, 7MQA|1|L1|A|1083, 7MQA|1|L1|C|1085, 7MQA|1|L1|A|1087
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7MQA_002 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.2483
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
7MQA|1|L1|A|671
7MQA|1|L1|A|672
7MQA|1|L1|G|673
*
7MQA|1|L1|C|1032
7MQA|1|L1|G|1033
7MQA|1|L1|A|1034
7MQA|1|L1|A|1035
7MQA|1|L1|A|1036
7MQA|1|L1|G|1037
*
7MQA|1|L1|C|1078
7MQA|1|L1|C|1079
7MQA|1|L1|A|1080
7MQA|1|L1|PSU|1081
7MQA|1|L1|A|1082
7MQA|1|L1|A|1083
7MQA|1|L1|A|1084
7MQA|1|L1|C|1085
7MQA|1|L1|G|1086
7MQA|1|L1|A|1087
7MQA|1|L1|U|1088
7MQA|1|L1|G|1089
*
7MQA|1|L1|U|1160
7MQA|1|L1|U|1161
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain LD
- 40S ribosomal protein S11
- Chain LW
- WD repeat-containing protein 46
- Chain NF
- 40S ribosomal protein S13
- Chain NG
- 40S ribosomal protein S14
- Chain NL
- Probable dimethyladenosine transferase
- Chain NO
- 40S ribosomal protein S15a
- Chain SI
- Ribosome biogenesis protein BMS1 homolog
- Chain SR
- 40S ribosomal protein S23
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